PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01185.1_g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 399aa    MW: 45016.2 Da    PI: 6.2018
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01185.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM113.32.5e-3551422127
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya..tgkrknratksgy 82 
                              p+G+rFhPtdee+v +y ++k  +++  +++ev+++vdiy+++P++L   +++k++++ wyfF +++++++  + +r++r tksg 
  Rsa1.0_01185.1_g00011.1   5 PVGYRFHPTDEEIVGDYVRPKNLESNtSHVDEVMNTVDIYEFDPSELAgkSRIKSTDEVWYFFGCKKNQQQskKRERQSRRTKSGS 90 
                              79*****************99665553788889**************85348889999*****888777762245688899***** PP

                      NAM  83 Wkatgkdkevlsk..kgelvglkktLvfy.....kgrapkgektdWvmheyr 127
                              Wk+tg + ++++k  ++e++g k+++vf      + + ++ +k+dWvmhey 
  Rsa1.0_01185.1_g00011.1  91 WKKTGDTMNIFRKrgDREKIGEKRVFVFSskilgESKPKSKSKSDWVMHEYV 142
                              ************9887889**********8777656777888*********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-363167IPR003441NAC domain
PROSITE profilePS5100538.0874167IPR003441NAC domain
PfamPF023651.0E-205142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MVDPPVGYRF HPTDEEIVGD YVRPKNLESN TSHVDEVMNT VDIYEFDPSE LAGKSRIKST  60
DEVWYFFGCK KNQQQSKKRE RQSRRTKSGS WKKTGDTMNI FRKRGDREKI GEKRVFVFSS  120
KILGESKPKS KSKSDWVMHE YVATFLSPTD QTTTMMMKYT VCKVMFKGDP RDLPSSSSSS  180
AGENEHHLSL ITHVNSSNSG GLSTETENPR HFTGFLHLEE ETQLEDAIRR AIDNVSTDDL  240
NFLLNNNDNA EKEQGNTMFM QEDRNDYRPK MSLTGVFIDR SDDDSDFDSI SSTTTTTGSI  300
KTSSTCVSFG FSNHPIHLPG SSTIESGSVT QEVSEALGTN TVTSEKKMNP CDDDAQVSEI  360
VGDQMGQEMV IKNKRAGFIY RMIQKFTKKI KLYSCVTGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B5e-14516418162NAC domain-containing protein 19
4dul_A5e-14516418162NAC domain-containing protein 19
1ut7_B5e-14516418162NO APICAL MERISTEM PROTEIN
1ut7_A5e-14516418162NO APICAL MERISTEM PROTEIN
1ut4_B5e-14516418162NO APICAL MERISTEM PROTEIN
1ut4_A5e-14516418162NO APICAL MERISTEM PROTEIN
3swp_D5e-14516421165NAC domain-containing protein 19
3swp_C5e-14516421165NAC domain-containing protein 19
3swp_B5e-14516421165NAC domain-containing protein 19
3swp_A5e-14516421165NAC domain-containing protein 19
3swm_D5e-14516421165NAC domain-containing protein 19
3swm_C5e-14516421165NAC domain-containing protein 19
3swm_B5e-14516421165NAC domain-containing protein 19
3swm_A5e-14516421165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009119784.10.0PREDICTED: NAC domain-containing protein 5-like
SwissprotO819141e-106NAC5_ARATH; NAC domain-containing protein 5
TrEMBLA0A078DLA90.0A0A078DLA9_BRANA; BnaA10g00920D protein
TrEMBLM4EWX30.0M4EWX3_BRARP; Uncharacterized protein
STRINGBra033308.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23151676
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02250.11e-80NAC domain containing protein 5